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This was solved by rebuilding the index on the pasteboard, (as I didn’t want to wipe out everything I had sitting there already, some of it had been massaged by hand) then copying in the relevant entries. It then exported to EPUB with no warnings.
Hey Jim,
If you want help with this sort of thing, you’re going to need to show us your code. I have successfully used ePub3 popup footnotes in iBooks, but there isn’t enough data here for me to tell you what’s wrong in your books.
My only clue is that you say “After I add the 4th NONE of the popup footnotes work” and that tells me that there was something malformed about the 4th footnote. Maybe an illegal character or something?
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